diff --git a/.github/workflows/publish-exp.yml b/.github/workflows/publish-exp.yml
index b99fdd8f..107acbe6 100644
--- a/.github/workflows/publish-exp.yml
+++ b/.github/workflows/publish-exp.yml
@@ -1,6 +1,9 @@
 name: Publish
 on: workflow_dispatch
 
+permissions:
+  contents: write
+
 jobs:
   build:
     runs-on: ubuntu-24.04
@@ -16,7 +19,7 @@ jobs:
       # Generate the build number based on tags to allow per branch build numbers, not something github provides by default.
       - name: Generate build number
         id: buildnumber
-        uses: onyxmueller/build-tag-number@v1
+        uses: FabricMCBot/build-tag-number@7d8df195c4691e1681d458016f75e8bbccdb3375
         with:
           token: ${{ secrets.github_token }}
           prefix: "build/exp/${{ github.ref }}"
diff --git a/gradle/libs.versions.toml b/gradle/libs.versions.toml
index bbd462a5..235d08e9 100644
--- a/gradle/libs.versions.toml
+++ b/gradle/libs.versions.toml
@@ -6,7 +6,7 @@ gson = "2.10.1"
 guava = "33.0.0-jre"
 
 stitch = "0.6.2"
-tiny-remapper = "0.11.0"
+tiny-remapper = "0.11.1"
 access-widener = "2.1.0"
 mapping-io = "0.7.1"
 lorenz-tiny = "4.0.2"
diff --git a/gradle/runtime.libs.versions.toml b/gradle/runtime.libs.versions.toml
index 0d15d2f6..edf33d83 100644
--- a/gradle/runtime.libs.versions.toml
+++ b/gradle/runtime.libs.versions.toml
@@ -2,7 +2,7 @@
 # Decompilers
 fernflower = "2.0.0"
 cfr = "0.2.2"
-vineflower = "1.11.0"
+vineflower = "1.11.1"
 
 # Runtime depedencies
 mixin-compile-extensions = "0.6.0"
diff --git a/src/main/java/net/fabricmc/loom/task/RemapJarTask.java b/src/main/java/net/fabricmc/loom/task/RemapJarTask.java
index 6ab55d72..28888275 100644
--- a/src/main/java/net/fabricmc/loom/task/RemapJarTask.java
+++ b/src/main/java/net/fabricmc/loom/task/RemapJarTask.java
@@ -318,6 +318,9 @@ public abstract class RemapJarTask extends AbstractRemapJarTask {
 			Objects.requireNonNull(tinyRemapperService, "tinyRemapperService");
 			Objects.requireNonNull(tinyRemapper, "tinyRemapper");
 
+			// Delete the old file to prevent deleted contents from sticking around in the jar.
+			Files.deleteIfExists(outputFile);
+
 			try (OutputConsumerPath outputConsumer = new OutputConsumerPath.Builder(outputFile).build()) {
 				outputConsumer.addNonClassFiles(inputFile);
 				tinyRemapper.apply(outputConsumer, tinyRemapperService.getOrCreateTag(inputFile));
diff --git a/src/test/groovy/net/fabricmc/loom/test/integration/SimpleProjectTest.groovy b/src/test/groovy/net/fabricmc/loom/test/integration/SimpleProjectTest.groovy
index 6c7edec0..888c0d7d 100644
--- a/src/test/groovy/net/fabricmc/loom/test/integration/SimpleProjectTest.groovy
+++ b/src/test/groovy/net/fabricmc/loom/test/integration/SimpleProjectTest.groovy
@@ -1,7 +1,7 @@
 /*
  * This file is part of fabric-loom, licensed under the MIT License (MIT).
  *
- * Copyright (c) 2016-2021 FabricMC
+ * Copyright (c) 2016-2025 FabricMC
  *
  * Permission is hereby granted, free of charge, to any person obtaining a copy
  * of this software and associated documentation files (the "Software"), to deal
@@ -100,4 +100,31 @@ class SimpleProjectTest extends Specification implements GradleProjectTestTrait
 		!result.output.contains("[WARN]  [MIXIN]") // Assert that tiny remapper didnt not have any warnings when remapping
 		gradle.getOutputZipEntry("fabric-example-mod-1.0.0.jar", "META-INF/MANIFEST.MF").contains("Fabric-Loom-Version: 0.0.0+unknown")
 	}
+
+	// Tests that deleted files don't remain in built jars after a rebuild.
+	// See https://github.com/FabricMC/fabric-loom/issues/1270.
+	@Unroll
+	def "deleted files disappear from jars (gradle #version)"() {
+		// Initial conditions: a project with a resource file to delete.
+		setup:
+		def gradle = gradleProject(project: "simple", version: version)
+		def deletedFile = new File(gradle.projectDir, "src/main/resources/foo.txt")
+		deletedFile.text = "hello, world!"
+		gradle.run(task: "build")
+
+		when:
+		// Delete the resource, then run another build.
+		deletedFile.delete()
+		def result = gradle.run(task: "build")
+
+		then:
+		result.task(":build").outcome == SUCCESS
+		!gradle.hasOutputZipEntry("fabric-example-mod-1.0.0.jar", "foo.txt")
+		!gradle.hasOutputZipEntry("fabric-example-mod-1.0.0-sources.jar", "foo.txt")
+		!gradle.hasOutputZipEntry("fabric-example-mod-1.0.0-no-remap.jar", "foo.txt")
+		!gradle.hasOutputZipEntry("fabric-example-mod-1.0.0-no-remap-sources.jar", "foo.txt")
+
+		where:
+		version << STANDARD_TEST_VERSIONS
+	}
 }